ination of this risk will open important new horizons. Key Words AIDS, Cardiovascular disease, Subclinical atherosclerosis, CIMT.Null.We study the flow of elongated grains (wooden pegs of length L=20 mm with circular cross section of diameter d_c=6 and 8 mm) from a silo with a rotating bottom and a circular orifice of diameter D. In the small orifice range (D/d less then 5) clogs are mostly broken by the rotating base, and the flow is intermittent with avalanches and temporary clogs. Here d≡(3/2d_c^2L)^1/3 is the effective grain diameter. Unlike for spherical grains, for rods the flow rate W clearly deviates from the power law dependence W∝(D-kd)^2.5 at lower orifice sizes in the intermittent regime, where W is measured in between temporary clogs only. Instead, below about D/d less then 3 an exponential dependence W∝e^κD is detected. Here k and κ are constants of order unity. Even more importantly, rotating the silo base leads to a strong-more than 50%-decrease of the flow rate, which otherwise does not depend significantly on the value of ω in the continuous flow regime. In the intermittent regime, W(ω) appears to follow a nonmonotonic trend, although with considerable noise. A simple picture, in terms of the switching from funnel flow to mass flow and the alignment of the pegs due to rotation, is proposed to explain the observed difference between spherical and elongated grains. We also observe shear-induced orientational ordering of the pegs at the bottom such that their long axes in average are oriented at a small angle 〈θ〉≈15^∘ to the motion of the bottom.The dynamics of biochemical reaction networks are considered to be responsible for biological functions in living systems. Since real networks are immense and complicated, it is difficult to determine which reactions can cause a significant change of dynamical behaviors, namely, bifurcations. Also to what extent numerical results of network systems depend on the chosen kinetic rate parameters is not known. In this paper, an analytical setting that splits the information of the dynamics into the network structure and reaction kinetics is introduced. This setting possesses a factorization structure for some class of network systems which allows one to determine which subnetworks are responsible for the occurrence of a bifurcation. Subsequently, the bifurcation criteria are reformulated in a manner that allows the efficient determination of relevant reactions for bifurcations.A fluid composed of two molecular species may undergo phase segregation via spinodal decomposition. However, if the two molecular species can interconvert, e.g., change their chirality, then a phenomenon of phase amplification, which has not been studied so far to our best knowledge, emerges. https://www.selleckchem.com/products/ipa-3.html As a result, eventually, one phase will completely eliminate the other one. We model this phenomenon on an Ising system which relaxes to equilibrium through a hybrid of Kawasaki-diffusion and Glauber-interconversion dynamics. By introducing a probability of Glauber-interconversion dynamics, we show that the particle conservation law is broken, thus resulting in phase amplification. We characterize the speed of phase amplification through scaling laws based on the probability of Glauber dynamics, system size, and distance to the critical temperature of demixing.In this paper, we account for the many critical exponents derived from the studies of the electrical conductivity in porous media by applying analysis of the well-known relation known as Archie's law. In spite of its seeming simplicity this law is considered to be "poorly understood," and the question that was and still is debated in the literature is whether there is some "hidden physics" in this law, or if it is "strictly a parametrization use for curve fitting with a priori no physical meaning." Our solution to the corresponding long-debated 78 years old puzzle is based on the classical percolation theory, but it also involves a principle that is based on continuum percolation. This principle is that the electrical properties of a percolation system are determined by the interplay between the connectivity of the conducting objects in that system, and the connectivity of the intersections between pairs of them. We thus propose a general concept that we call an electrically affected connectivity, and we predfrom Archie's-law data, within the framework of the percolation phase transition, is expected to open a new direction in the understanding and the applications of this law.A variety of theoretical models have been proposed to calculate the stopping power of charged particles in matter, which is a fundamental issue in many fields. However, the approximation adopted in these theories will be challenged under warm dense matter conditions. Molecular dynamics (MD) simulation is a good way to validate the effectiveness of these models. We investigate the stopping power of warm dense hydrogen for electrons with projectile energies ranging from 400-10000 eV by means of an electron force field (eFF) method, which can effectively avoid the Coulomb catastrophe in conventional MD calculations. It is found that the stopping power of warm dense hydrogen decreases with increasing temperature of the sample at those high projectile velocities. This phenomenon could be explained by the effect of electronic structure dominated by bound electrons, which is further explicated by a modified random phase approximation (RPA) model based on local density approximation proper to inhomogeneous media. Most of the models extensively accepted by the plasma community, e.g., Landau-Spitzer model, Brown-Preston-Singleton model and RPA model, cannot well address the effect caused by bound electrons so that their predictions of stopping power contradict our result. Therefore, the eFF simulations of this paper reveals the important role played by the bound electrons on stopping power in warm dense plasmas.Gene transcription is a complex multistep biochemical process, which can create memory between individual reaction events. On the other hand, many inducible genes, when activated by external cues, are often coregulated by several competitive pathways with crosstalk. This raises an unexplored question how do molecular memory and crosstalk together affect gene expressions? To address this question, we introduce a queuing model of stochastic transcription, where two crossing signaling pathways are used to direct gene activation in response to external signals and memory functions to model multistep reaction processes involved in transcription. We first establish, based on the total probability principle, the chemical master equation for this queuing model, and then we derive, based on the binomial moment approach, exact expressions for statistical quantities (including distributions) of mRNA, which provide insights into the roles of crosstalk and memory in controlling the mRNA level and noise. We find that molecular memory of gene activation decreases the mRNA level but increases the mRNA noise, and double activation pathways always reduce the mRNA noise in contrast to a single pathway.
ination of this risk will open important new horizons. Key Words AIDS, Cardiovascular disease, Subclinical atherosclerosis, CIMT.Null.We study the flow of elongated grains (wooden pegs of length L=20 mm with circular cross section of diameter d_c=6 and 8 mm) from a silo with a rotating bottom and a circular orifice of diameter D. In the small orifice range (D/d less then 5) clogs are mostly broken by the rotating base, and the flow is intermittent with avalanches and temporary clogs. Here d≡(3/2d_c^2L)^1/3 is the effective grain diameter. Unlike for spherical grains, for rods the flow rate W clearly deviates from the power law dependence W∝(D-kd)^2.5 at lower orifice sizes in the intermittent regime, where W is measured in between temporary clogs only. Instead, below about D/d less then 3 an exponential dependence W∝e^κD is detected. Here k and κ are constants of order unity. Even more importantly, rotating the silo base leads to a strong-more than 50%-decrease of the flow rate, which otherwise does not depend significantly on the value of ω in the continuous flow regime. In the intermittent regime, W(ω) appears to follow a nonmonotonic trend, although with considerable noise. A simple picture, in terms of the switching from funnel flow to mass flow and the alignment of the pegs due to rotation, is proposed to explain the observed difference between spherical and elongated grains. We also observe shear-induced orientational ordering of the pegs at the bottom such that their long axes in average are oriented at a small angle 〈θ〉≈15^∘ to the motion of the bottom.The dynamics of biochemical reaction networks are considered to be responsible for biological functions in living systems. Since real networks are immense and complicated, it is difficult to determine which reactions can cause a significant change of dynamical behaviors, namely, bifurcations. Also to what extent numerical results of network systems depend on the chosen kinetic rate parameters is not known. In this paper, an analytical setting that splits the information of the dynamics into the network structure and reaction kinetics is introduced. This setting possesses a factorization structure for some class of network systems which allows one to determine which subnetworks are responsible for the occurrence of a bifurcation. Subsequently, the bifurcation criteria are reformulated in a manner that allows the efficient determination of relevant reactions for bifurcations.A fluid composed of two molecular species may undergo phase segregation via spinodal decomposition. However, if the two molecular species can interconvert, e.g., change their chirality, then a phenomenon of phase amplification, which has not been studied so far to our best knowledge, emerges. https://www.selleckchem.com/products/ipa-3.html As a result, eventually, one phase will completely eliminate the other one. We model this phenomenon on an Ising system which relaxes to equilibrium through a hybrid of Kawasaki-diffusion and Glauber-interconversion dynamics. By introducing a probability of Glauber-interconversion dynamics, we show that the particle conservation law is broken, thus resulting in phase amplification. We characterize the speed of phase amplification through scaling laws based on the probability of Glauber dynamics, system size, and distance to the critical temperature of demixing.In this paper, we account for the many critical exponents derived from the studies of the electrical conductivity in porous media by applying analysis of the well-known relation known as Archie's law. In spite of its seeming simplicity this law is considered to be "poorly understood," and the question that was and still is debated in the literature is whether there is some "hidden physics" in this law, or if it is "strictly a parametrization use for curve fitting with a priori no physical meaning." Our solution to the corresponding long-debated 78 years old puzzle is based on the classical percolation theory, but it also involves a principle that is based on continuum percolation. This principle is that the electrical properties of a percolation system are determined by the interplay between the connectivity of the conducting objects in that system, and the connectivity of the intersections between pairs of them. We thus propose a general concept that we call an electrically affected connectivity, and we predfrom Archie's-law data, within the framework of the percolation phase transition, is expected to open a new direction in the understanding and the applications of this law.A variety of theoretical models have been proposed to calculate the stopping power of charged particles in matter, which is a fundamental issue in many fields. However, the approximation adopted in these theories will be challenged under warm dense matter conditions. Molecular dynamics (MD) simulation is a good way to validate the effectiveness of these models. We investigate the stopping power of warm dense hydrogen for electrons with projectile energies ranging from 400-10000 eV by means of an electron force field (eFF) method, which can effectively avoid the Coulomb catastrophe in conventional MD calculations. It is found that the stopping power of warm dense hydrogen decreases with increasing temperature of the sample at those high projectile velocities. This phenomenon could be explained by the effect of electronic structure dominated by bound electrons, which is further explicated by a modified random phase approximation (RPA) model based on local density approximation proper to inhomogeneous media. Most of the models extensively accepted by the plasma community, e.g., Landau-Spitzer model, Brown-Preston-Singleton model and RPA model, cannot well address the effect caused by bound electrons so that their predictions of stopping power contradict our result. Therefore, the eFF simulations of this paper reveals the important role played by the bound electrons on stopping power in warm dense plasmas.Gene transcription is a complex multistep biochemical process, which can create memory between individual reaction events. On the other hand, many inducible genes, when activated by external cues, are often coregulated by several competitive pathways with crosstalk. This raises an unexplored question how do molecular memory and crosstalk together affect gene expressions? To address this question, we introduce a queuing model of stochastic transcription, where two crossing signaling pathways are used to direct gene activation in response to external signals and memory functions to model multistep reaction processes involved in transcription. We first establish, based on the total probability principle, the chemical master equation for this queuing model, and then we derive, based on the binomial moment approach, exact expressions for statistical quantities (including distributions) of mRNA, which provide insights into the roles of crosstalk and memory in controlling the mRNA level and noise. We find that molecular memory of gene activation decreases the mRNA level but increases the mRNA noise, and double activation pathways always reduce the mRNA noise in contrast to a single pathway.
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